- Package for visualization of high-dimensional dataset via dimension reduction methods → for exploratory analysis of genomic data in R: esetVis
- input: Bioconductor expressionSet object
- 3 multivariate projection methods:
- spectral map (Lewi,P.J 1976): mpm package
→ esetSpectralMap - T-Distributed Stochastic Neighbor Embedding (tsne) (Van der Maaten and Hinton 2008): Rtsne package
→ esetTsne - linear discriminant analysis (Fisher, R. A. 1936): MASS package → esetLda
- spectral map (Lewi,P.J 1976): mpm package
- graphics libraries:
- static with
ggplot2package - interactive:
ggvis,rbokehpackages
- static with